Index

Symbols

--bs esat-analysis-error-error-results command line option esat-analysis-error-summary command line option esat-run-error command line option --bsdisp esat-analysis-error-error-results command line option esat-analysis-error-summary command line option esat-run-error command line option --disp esat-analysis-error-error-results command line option esat-analysis-error-summary command line option esat-run-error command line option --factor_idx esat-analysis-error-error-results command line option esat-analysis-solution-plot-profile command line option esat-analysis-solution-plot-surface command line option --factor_idx1 esat-analysis-constrained-plot-gspace command line option esat-analysis-solution-plot-gspace command line option --factor_idx2 esat-analysis-constrained-plot-gspace command line option esat-analysis-solution-plot-gspace command line option --feature_idx esat-analysis-constrained-plot-contributions command line option esat-analysis-input-plot-feature command line option esat-analysis-input-plot-timeseries command line option esat-analysis-solution-plot-contributions command line option esat-analysis-solution-plot-estimated command line option esat-analysis-solution-plot-residuals command line option esat-analysis-solution-plot-surface command line option esat-analysis-solution-plot-timeseries command line option --feature_idx1 esat-analysis-input-plot-data command line option --feature_idx2 esat-analysis-input-plot-data command line option --qtype esat-analysis-constrained-plot-q command line option --selected_model esat-analysis-solution-plot-composition command line option esat-analysis-solution-plot-contributions command line option esat-analysis-solution-plot-estimated command line option esat-analysis-solution-plot-fingerprints command line option esat-analysis-solution-plot-gspace command line option esat-analysis-solution-plot-profile command line option esat-analysis-solution-plot-residuals command line option esat-analysis-solution-plot-surface command line option esat-analysis-solution-plot-timeseries command line option esat-analysis-solution-statistics command line option

--show_base esat-analysis-constrained-plot-gspace command line option --show_delta esat-analysis-constrained-plot-gspace command line option --version esat command line option -f esat-analysis-solution-plot-surface command line option -i esat-analysis-constrained-plot-contributions command line option esat-analysis-input-plot-feature command line option esat-analysis-input-plot-timeseries command line option esat-analysis-solution-plot-contributions command line option esat-analysis-solution-plot-estimated command line option esat-analysis-solution-plot-profile command line option esat-analysis-solution-plot-residuals command line option esat-analysis-solution-plot-surface command line option esat-analysis-solution-plot-timeseries command line option -m esat-analysis-solution-plot-composition command line option esat-analysis-solution-plot-contributions command line option esat-analysis-solution-plot-estimated command line option esat-analysis-solution-plot-fingerprints command line option esat-analysis-solution-plot-gspace command line option esat-analysis-solution-plot-profile command line option esat-analysis-solution-plot-residuals command line option esat-analysis-solution-plot-surface command line option esat-analysis-solution-plot-timeseries command line option esat-analysis-solution-statistics command line option -q esat-analysis-constrained-plot-q command line option -x esat-analysis-constrained-plot-gspace command line option esat-analysis-input-plot-data command line option esat-analysis-solution-plot-gspace command line option -y esat-analysis-constrained-plot-gspace command line option esat-analysis-input-plot-data command line option esat-analysis-solution-plot-gspace command line option

A

add_constraint() (esat.rotational.constrained.ConstrainedModel method)

add_expression() (esat.rotational.constrained.ConstrainedModel method)

B

b_star_cb (esat.model.recombinator.OptimalBlockLength attribute) b_star_sb (esat.model.recombinator.OptimalBlockLength attribute) BatchAnalysis (class in esat.data.analysis)

BatchSA (class in esat.model.batch_sa) Bootstrap (class in esat.error.bootstrap) BSDISP (class in esat.error.bs_disp)

C

calculate_correlation() (eval.factor_comparison.FactorCompare static method) calculate_factor_correlation() (in module esat.utils) calculate_Q() (in module esat.metrics) calculate_statistics() (esat.data.analysis.ModelAnalysis method) combine_factors() (eval.factor_comparison.FactorCompare method)

compare() (eval.factor_comparison.FactorCompare method) (eval.simulator.Simulator method) compare_all_factors() (in module esat.utils) CompareAnalyzer (class in esat.data.test_tools) ConstrainedModel (class in esat.rotational.constrained) Constraint (class in esat.rotational.constrained)

D

DataHandler (class in esat.data.datahandler) describe() (esat.rotational.constrained.Constraint method) details() (esat.model.batch_sa.BatchSA method)

Displacement (class in esat.error.displacement) display_results() (esat.rotational.constrained.ConstrainedModel method) dQmax (esat.error.bs_disp.BSDISP attribute) (esat.error.displacement.Displacement attribute)

E

Error (class in esat.error.error) esat module esat command line option --version esat-analysis-batch-plot-distribution command line option PROJECT_DIRECTORY esat-analysis-batch-plot-loss command line option PROJECT_DIRECTORY esat-analysis-constrained-eval-constraints command line option PROJECT_DIRECTORY esat-analysis-constrained-eval-expressions command line option PROJECT_DIRECTORY esat-analysis-constrained-plot-contributions command line option --feature_idx -i PROJECT_DIRECTORY esat-analysis-constrained-plot-fingerprints command line option PROJECT_DIRECTORY esat-analysis-constrained-plot-gspace command line option --factor_idx1 --factor_idx2 --show_base --show_delta -x -y PROJECT_DIRECTORY esat-analysis-constrained-plot-q command line option --qtype -q PROJECT_DIRECTORY esat-analysis-constrained-summary command line option PROJECT_DIRECTORY esat-analysis-error-error-results command line option --bs --bsdisp --disp --factor_idx PROJECT_DIRECTORY esat-analysis-error-summary command line option --bs --bsdisp --disp PROJECT_DIRECTORY esat-analysis-input-metrics command line option PROJECT_DIRECTORY esat-analysis-input-plot-data command line option --feature_idx1 --feature_idx2 -x -y PROJECT_DIRECTORY esat-analysis-input-plot-feature command line option --feature_idx -i PROJECT_DIRECTORY esat-analysis-input-plot-timeseries command line option --feature_idx -i PROJECT_DIRECTORY esat-analysis-solution-plot-composition command line option --selected_model -m PROJECT_DIRECTORY esat-analysis-solution-plot-contributions command line option --feature_idx --selected_model -i -m PROJECT_DIRECTORY esat-analysis-solution-plot-estimated command line option --feature_idx --selected_model -i -m PROJECT_DIRECTORY esat-analysis-solution-plot-fingerprints command line option --selected_model -m PROJECT_DIRECTORY esat-analysis-solution-plot-gspace command line option --factor_idx1 --factor_idx2 --selected_model -m -x -y PROJECT_DIRECTORY esat-analysis-solution-plot-profile command line option --factor_idx --selected_model -i -m PROJECT_DIRECTORY esat-analysis-solution-plot-residuals command line option --feature_idx --selected_model -i -m PROJECT_DIRECTORY

esat-analysis-solution-plot-surface command line option --factor_idx --feature_idx --selected_model -f -i -m PROJECT_DIRECTORY esat-analysis-solution-plot-timeseries command line option --feature_idx --selected_model -i -m PROJECT_DIRECTORY esat-analysis-solution-statistics command line option --selected_model -m PROJECT_DIRECTORY esat-estimate command line option PROJECT_DIRECTORY esat-run command line option PROJECT_DIRECTORY esat-run-constrained command line option PROJECT_DIRECTORY esat-run-error command line option --bs --bsdisp --disp PROJECT_DIRECTORY esat-setup command line option PROJECT_DIRECTORY esat-setup-constrained command line option PROJECT_DIRECTORY esat-setup-error command line option PROJECT_DIRECTORY esat-simulator-compare command line option PROJECT_DIRECTORY esat-simulator-generate command line option PROJECT_DIRECTORY esat-simulator-plot command line option PROJECT_DIRECTORY esat-simulator-setup command line option PROJECT_DIRECTORY esat.cli module esat.cli.esat_cli module esat.configs module esat.data module esat.data.analysis module esat.data.datahandler module esat.data.test_tools module esat.error module esat.error.bootstrap module esat.error.bs_disp module esat.error.displacement module esat.error.error module esat.estimator module esat.metrics module esat.model module esat.model.batch_sa module esat.model.ls_nmf module esat.model.recombinator module esat.model.sa module esat.model.ws_nmf module esat.rotational module esat.rotational.constrained module esat.utils module eval module eval.factor_comparison module eval.simulator module evaluate_constraints() (esat.rotational.constrained.ConstrainedModel method) evaluate_expressions() (esat.rotational.constrained.ConstrainedModel method)

F

FactorCompare (class in eval.factor_comparison) FactorEstimator (class in esat.estimator)

feature_histogram() (esat.data.test_tools.CompareAnalyzer method) features_metrics() (esat.data.analysis.ModelAnalysis method)

G

generate_profiles() (eval.simulator.Simulator method) get_batchsa() (in module esat.cli.esat_cli) get_config() (in module esat.cli.esat_cli) get_constrained_model() (in module esat.cli.esat_cli) get_data() (esat.data.datahandler.DataHandler method) (eval.simulator.Simulator method)

get_dh() (in module esat.cli.esat_cli) get_error_model() (in module esat.cli.esat_cli) get_model_analysis() (in module esat.cli.esat_cli) get_sim() (in module esat.cli.esat_cli)

I

initialize() (esat.model.sa.SA method)

L

lam() (in module esat.model.recombinator) list_constraints() (esat.rotational.constrained.ConstrainedModel method) list_expressions() (esat.rotational.constrained.ConstrainedModel method) load() (esat.error.bootstrap.Bootstrap static method) (esat.error.bs_disp.BSDISP static method) (esat.error.displacement.Displacement static method) (esat.model.batch_sa.BatchSA static method) (esat.model.sa.SA static method) (esat.rotational.constrained.ConstrainedModel static method) (eval.simulator.Simulator static method)

load_dataframe() (esat.data.datahandler.DataHandler static method) load_pmf_output() (eval.factor_comparison.FactorCompare static method) LSNMF (class in esat.model.ls_nmf)

M

map_contributions() (esat.error.bootstrap.Bootstrap method) map_factors() (esat.error.bootstrap.Bootstrap method) mlag() (in module esat.model.recombinator) ModelAnalysis (class in esat.data.analysis) module esat esat.cli esat.cli.esat_cli esat.configs esat.data esat.data.analysis esat.data.datahandler esat.data.test_tools esat.error esat.error.bootstrap esat.error.bs_disp esat.error.displacement esat.error.error esat.estimator esat.metrics esat.model esat.model.batch_sa esat.model.ls_nmf esat.model.recombinator esat.model.sa esat.model.ws_nmf esat.rotational esat.rotational.constrained esat.utils eval eval.factor_comparison eval.simulator

N

np_encoder() (in module esat.utils)

O

optimal_block_length() (in module esat.model.recombinator)

OptimalBlockLength (class in esat.model.recombinator)

P

plot() (esat.estimator.FactorEstimator method) plot_comparison() (eval.simulator.Simulator method) plot_contribution() (esat.error.bootstrap.Bootstrap method) (esat.error.bs_disp.BSDISP method) (esat.error.displacement.Displacement method) plot_contributions() (esat.rotational.constrained.ConstrainedModel method) plot_data_uncertainty() (esat.data.datahandler.DataHandler method) plot_estimated_observed() (esat.data.analysis.ModelAnalysis method) plot_estimated_timeseries() (esat.data.analysis.ModelAnalysis method) plot_factor() (esat.error.bootstrap.Bootstrap method) plot_factor_composition() (esat.data.analysis.ModelAnalysis method) plot_factor_contribution() (esat.data.test_tools.CompareAnalyzer method) plot_factor_contributions() (esat.data.analysis.ModelAnalysis method) (esat.rotational.constrained.ConstrainedModel method) plot_factor_fingerprints() (esat.data.analysis.ModelAnalysis method) (esat.rotational.constrained.ConstrainedModel method) plot_factor_profile() (esat.data.analysis.ModelAnalysis method) plot_factor_surface() (esat.data.analysis.ModelAnalysis method) plot_factors() (esat.data.test_tools.CompareAnalyzer method) plot_feature_data() (esat.data.datahandler.DataHandler method) plot_feature_timeseries() (esat.data.datahandler.DataHandler method) (esat.data.test_tools.CompareAnalyzer method) plot_fingerprints() (esat.data.test_tools.CompareAnalyzer method) plot_g_space() (esat.data.analysis.ModelAnalysis method) (esat.rotational.constrained.ConstrainedModel method) plot_loss() (esat.data.analysis.BatchAnalysis method) plot_loss_distribution() (esat.data.analysis.BatchAnalysis method) plot_profile() (esat.error.bs_disp.BSDISP method) (esat.error.displacement.Displacement method) (esat.rotational.constrained.ConstrainedModel method) plot_profile_comparison() (eval.simulator.Simulator method) plot_profile_contributions() (esat.rotational.constrained.ConstrainedModel method) plot_Q() (esat.rotational.constrained.ConstrainedModel method) plot_residual_histogram() (esat.data.analysis.ModelAnalysis method) plot_results() (esat.error.bootstrap.Bootstrap method) (esat.error.bs_disp.BSDISP method) (esat.error.displacement.Displacement method) plot_summary() (esat.error.error.Error method) plot_synthetic_contributions() (eval.simulator.Simulator method)

plot_temporal_residuals() (esat.data.analysis.BatchAnalysis method) print_results() (eval.factor_comparison.FactorCompare method) PROJECT_DIRECTORY esat-analysis-batch-plot-distribution command line option esat-analysis-batch-plot-loss command line option esat-analysis-constrained-eval-constraints command line option esat-analysis-constrained-eval-expressions command line option esat-analysis-constrained-plot-contributions command line option esat-analysis-constrained-plot-fingerprints command line option esat-analysis-constrained-plot-gspace command line option esat-analysis-constrained-plot-q command line option esat-analysis-constrained-summary command line option esat-analysis-error-error-results command line option esat-analysis-error-summary command line option esat-analysis-input-metrics command line option esat-analysis-input-plot-data command line option esat-analysis-input-plot-feature command line option esat-analysis-input-plot-timeseries command line option esat-analysis-solution-plot-composition command line option esat-analysis-solution-plot-contributions command line option esat-analysis-solution-plot-estimated command line option esat-analysis-solution-plot-fingerprints command line option esat-analysis-solution-plot-gspace command line option esat-analysis-solution-plot-profile command line option esat-analysis-solution-plot-residuals command line option esat-analysis-solution-plot-surface command line option esat-analysis-solution-plot-timeseries command line option esat-analysis-solution-statistics command line option esat-estimate command line option esat-run command line option esat-run-constrained command line option esat-run-error command line option esat-setup command line option esat-setup-constrained command line option esat-setup-error command line option esat-simulator-compare command line option esat-simulator-generate command line option esat-simulator-plot command line option esat-simulator-setup command line option

Q

q_factor() (in module esat.metrics)

q_loss() (in module esat.metrics) qr_loss() (in module esat.metrics)

R

remove_constraint() (esat.rotational.constrained.ConstrainedModel method) remove_expression() (esat.rotational.constrained.ConstrainedModel method) run() (esat.error.bootstrap.Bootstrap method) (esat.error.bs_disp.BSDISP method) (esat.error.displacement.Displacement method) (esat.estimator.FactorEstimator method)

S

SA (class in esat.model.sa) save() (esat.error.bootstrap.Bootstrap method) (esat.error.bs_disp.BSDISP method) (esat.error.displacement.Displacement method) (esat.model.batch_sa.BatchSA method) (esat.model.sa.SA method) (esat.rotational.constrained.ConstrainedModel method) (eval.simulator.Simulator method) set_category() (esat.data.datahandler.DataHandler method)

show_factor_results() (esat.error.bootstrap.Bootstrap method) show_mapping_table() (esat.error.bootstrap.Bootstrap method) show_q_table() (esat.error.bootstrap.Bootstrap method) Simulator (class in eval.simulator) solution_bump() (in module esat.utils) summary() (esat.error.bootstrap.Bootstrap method) (esat.error.bs_disp.BSDISP method) (esat.error.displacement.Displacement method) (esat.model.sa.SA method)

T

timeseries_plot() (esat.data.test_tools.CompareAnalyzer method) tostring() (esat.rotational.constrained.Constraint method) train() (esat.model.batch_sa.BatchSA method) (esat.model.sa.SA method) (esat.rotational.constrained.ConstrainedModel method)

type_list (esat.rotational.constrained.Constraint attribute)

U

update() (esat.model.ls_nmf.LSNMF static method) (esat.model.ws_nmf.WSNMF static method)

update_contribution() (eval.simulator.Simulator method)

W

WSNMF (class in esat.model.ws_nmf)